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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mp4 UPG Glucose-1-phosphate thymidylyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1mp4 UPGGlucose-1-phosphate thymidylyltransferase / 1.169
4ho6 UPGGlucose-1-phosphate thymidylyltransferase / 0.840
1mp5 UPGGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.821
4ho9 GDUGlucose-1-phosphate thymidylyltransferase / 0.807
1iin UPGGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.806
4ho8 UPGGlucose-1-phosphate thymidylyltransferase / 0.721
5ify TRHGlucose-1-phosphate thymidylyltransferase / 0.669
4ho5 DAUGlucose-1-phosphate thymidylyltransferase / 0.664
3hdy GDUUDP-galactopyranose mutase / 0.655
1jvd UD1UDP-N-acetylhexosamine pyrophosphorylase 2.7.7.23 0.652
1h5t DAUGlucose-1-phosphate thymidylyltransferase 1 / 0.650