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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ml6 GBX Glutathione S-transferase A2 2.5.1.18

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ml6 GBXGlutathione S-transferase A2 2.5.1.18 1.371
2a2s GSNGlutathione S-transferase P 2.5.1.18 0.732
9gss GTXGlutathione S-transferase P 2.5.1.18 0.716
1gul GLY_GGL_ICYGlutathione S-transferase A4 2.5.1.18 0.698
4pgt GBXGlutathione S-transferase P 2.5.1.18 0.696
1vf3 GDNGlutathione S-transferase 3 2.5.1.18 0.690
3o76 GTBGlutathione S-transferase P 1 2.5.1.18 0.676
17gs GTXGlutathione S-transferase P 2.5.1.18 0.669
2oad GTBGlutathione S-transferase P 1 2.5.1.18 0.653
1vf2 GTXGlutathione S-transferase 3 2.5.1.18 0.650