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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mk5 BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1mk5 BTNStreptavidin / 1.066
3ry2 BTNStreptavidin / 1.061
3wyq BTNStreptavidin / 1.045
2izi BTNStreptavidin / 1.040
2y3f BTNStreptavidin / 1.039
2izf BTNStreptavidin / 1.034
4yvb BTNStreptavidin / 1.034
3wyp BSOStreptavidin / 1.027
1nqm BTNStreptavidin / 1.024
2rtg BTNStreptavidin / 1.024
4gda BTNStreptavidin / 1.022
2izh BTNStreptavidin / 1.015
2izj BTNStreptavidin / 1.000
1n43 BTNStreptavidin / 0.999
2rtd BTNStreptavidin / 0.992
2rtf BTNStreptavidin / 0.992
1luq BTNStreptavidin / 0.990
1i9h BNIStreptavidin / 0.980
3wzn BTNStreptavidin / 0.979
1swe BTNStreptavidin / 0.977
1df8 BTNStreptavidin / 0.972
2rte BTNStreptavidin / 0.970
4gd9 BTNStreptavidin / 0.969
3rdo BTNStreptavidin / 0.968
2izg BTNStreptavidin / 0.961
1n9m BTNStreptavidin / 0.960
3rdq DTBStreptavidin / 0.958
4dne DTBStreptavidin / 0.956
2zsc BTNTamavidin2 / 0.954
4bx7 B4FStreptavidin / 0.948
1stp BTNStreptavidin / 0.939
4z28 BTNHoefavidin / 0.929
1mep BTNStreptavidin / 0.923
1ndj BTNStreptavidin / 0.918
1swg BTNStreptavidin / 0.916
1lcz BH7Streptavidin / 0.904
1rxj BNIStreptavidin / 0.896
1lcw SHMStreptavidin / 0.884
2uyw BTNAvd protein / 0.881
2rtr IMIStreptavidin / 0.876
2izl IMIStreptavidin / 0.875
1swr BTNStreptavidin / 0.873
1swt BTNStreptavidin / 0.870
2rtq IMIStreptavidin / 0.863
1swn BTNStreptavidin / 0.862
1nc9 IMIStreptavidin / 0.861
2rtp IMIStreptavidin / 0.852
1swp BTNStreptavidin / 0.848
1y52 BTNAvidin-related protein 4/5 / 0.847
2rtm IMIStreptavidin / 0.843
3t2w BTNAvidin/streptavidin / 0.843
1swd BTNStreptavidin / 0.833
2fhl BNIAvidin-related protein 4/5 / 0.832
2fhn BNIAvidin-related protein 4/5 / 0.830
4bcs BTNAvidin-related protein 4/5 / 0.829
3ew2 BTNHypothetical conserved protein / 0.812
2c4i BTNAvidin / 0.806
4bj8 BTNAvidin / 0.798
3vhi VHIAvidin / 0.789
2jgs BTNAvidin / 0.765
3vgw NVZAvidin / 0.751
2avi BTNAvidin / 0.726
1rxh BNIStreptavidin / 0.711
2rtn IMIStreptavidin / 0.706
2rtl IMIStreptavidin / 0.703
3vhm NPKAvidin / 0.689
1ldq SHMAvidin / 0.663