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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mg5 NAI Alcohol dehydrogenase 1.1.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 1.257
3rj5 NADAlcohol dehydrogenase 1.1.1.1 1.108
1b16 NAQAlcohol dehydrogenase 1.1.1.1 1.092
1b15 NAEAlcohol dehydrogenase 1.1.1.1 1.073
3rj9 NADAlcohol dehydrogenase 1.1.1.1 1.018
1b2l NDCAlcohol dehydrogenase 1.1.1.1 1.015
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.893
1sby NADAlcohol dehydrogenase 1.1.1.1 0.850
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.827
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.822
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.822
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.817
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.813
4b79 NADProbable short-chain dehydrogenase / 0.812
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.810
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.807
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.806
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.805
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.802
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.800
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.798
1orr NADCDP-paratose 2-epimerase / 0.788
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.786
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.785
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.785
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.784
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.784
1x7h NDPPutative ketoacyl reductase 1.3.1 0.778
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.778
3s55 NADPutative short-chain dehydrogenase/reductase / 0.777
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.776
1x7g NAPPutative ketoacyl reductase 1.3.1 0.775
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.773
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.772
3wds NADNADH-dependent quinuclidinone reductase / 0.772
3sx2 NADUncharacterized protein / 0.771
2p5y NADUDP-glucose 4-epimerase / 0.770
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.769
2wsb NADGalactitol dehydrogenase / 0.768
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.768
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.767
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.767
4qec NAPElxO / 0.767
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.766
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.765
3geg NADShort-chain dehydrogenase/reductase SDR / 0.763
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.761
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.761
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.759
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.758
3r3s NADPutative oxidoreductase / 0.757
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.755
3o26 NDPSalutaridine reductase / 0.755
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.754
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.754
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.753
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.752
2wdz NADGalactitol dehydrogenase / 0.752
4yag NAIC alpha-dehydrogenase / 0.752
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.751
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.750
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.750
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.749
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.749
3tsc NADUncharacterized protein / 0.748
4yai NAIC alpha-dehydrogenase / 0.748
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.747
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.745
3ak4 NADNADH-dependent quinuclidinone reductase / 0.743
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.743
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.742
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.742
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.742
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.741
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.740
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.740
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.739
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.738
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.738
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.738
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.738
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.737
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.736
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.736
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.735
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.735
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.735
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.732
4dbz NDPPutative ketoacyl reductase 1.3.1 0.732
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.731
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.729
1i3l NADUDP-glucose 4-epimerase / 0.728
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.728
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.727
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.725
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.724
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.724
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.723
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.723
3tn7 NJPShort-chain alcohol dehydrogenase / 0.722
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.721
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.719
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.719
3uce NDPDehydrogenase / 0.717
4fn4 NADShort chain dehydrogenase / 0.716
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.716
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.715
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.714
4kwh NAPReductase homolog / 0.712
3mje NDPAmphB / 0.711
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.711
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.710
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.710
4wec NADShort chain dehydrogenase / 0.710
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.709
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.709
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.709
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.709
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.708
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.707
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.706
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.706
3l77 NJPShort-chain alcohol dehydrogenase / 0.705
4hxy NDPPlm1 / 0.705
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.705
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.704
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.704
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.703
3sju NDPKeto reductase / 0.702
1iy8 NADLevodione reductase / 0.701
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.699
2pr2 DG1Enoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.699
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.698
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.698
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.698
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.698
4u7w NDPMxaA / 0.698
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.697
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.697
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.697
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.695
2p5u NADUDP-glucose 4-epimerase / 0.694
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.693
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.692
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.692
2c29 NAPDihydroflavonol 4-reductase / 0.691
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.691
3ai2 NDPNADPH-sorbose reductase / 0.690
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.688
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.688
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.688
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.688
4idg NADPutative UDP-glucose 4-epimerase / 0.688
1wvg APRCDP-glucose 4,6-dehydratase 4.2.1.45 0.686
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.686
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.686
2yut NAPPutative short-chain oxidoreductase / 0.685
3qrw NDPPutative ketoacyl reductase 1.3.1 0.685
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.685
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.684
2b36 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.684
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.683
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.682
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.682
1zem NADXylitol dehydrogenase / 0.681
3orf NADDihydropteridine reductase 1.5.1.34 0.681
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.681
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.680
3p19 NDPPutative blue fluorescent protein / 0.680
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.680
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.680
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.679
3ko8 NADNAD-dependent epimerase/dehydratase / 0.678
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.678
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.677
3wmx NADNAD dependent epimerase/dehydratase / 0.677
2jah NDPClavaldehyde dehydrogenase / 0.676
3a4v NADNDP-sugar epimerase / 0.675
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.674
1g1a NADdTDP-glucose 4,6-dehydratase / 0.673
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.673
2c20 NADUDP-glucose 4-epimerase / 0.673
1ae1 NAPTropinone reductase 1 / 0.672
1sny NAPLD36273p / 0.672
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.671
3h4v NAPPteridine reductase 1 1.5.1.33 0.671
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.671
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.670
3ajr NADNDP-sugar epimerase / 0.670
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.670
5lc1 NADL-threonine 3-dehydrogenase / 0.670
2nq8 ZIDEnoyl-ACP reductase / 0.669
3icp NADNAD-dependent epimerase/dehydratase / 0.669
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.669
2dte NAIGlucose 1-dehydrogenase related protein / 0.668
3tox NAPPutative oxidoreductase / 0.668
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.668
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.667
5jla NADPutative short-chain dehydrogenase/reductase / 0.667
2bd0 NAPSepiapterin reductase / 0.666
2yy7 NADL-threonine dehydrogenase / 0.665
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.665
1bvr NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
1ipe NDPTropinone reductase 2 1.1.1.236 0.663
1oaa NAPSepiapterin reductase 1.1.1.153 0.661
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.661
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.661
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.659
3ai3 NDPNADPH-sorbose reductase / 0.659
4bmv NAPShort-chain dehydrogenase / 0.659
1kc1 NDPdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.658
5d2e NAPMlnE / 0.658
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.657
1o9j NADAldehyde dehydrogenase, cytosolic 1 1.2.1.3 0.656
4clo NAPPteridine reductase / 0.656
4egb NADdTDP-glucose 4,6-dehydratase / 0.656
4imp NDPPolyketide synthase extender modules 3-4 / 0.656
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.655
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.654
3aw9 NADNAD-dependent epimerase/dehydratase / 0.653
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.653
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.653
4qed NAPElxO / 0.653
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.651
3q2k NAIProbable oxidoreductase / 0.651
4cr8 NADN-acylmannosamine 1-dehydrogenase 1.1.1.233 0.650
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.650