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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mf0 GDP Adenylosuccinate synthetase isozyme 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1mf0 GDPAdenylosuccinate synthetase isozyme 1 / 1.055
1mez GDPAdenylosuccinate synthetase isozyme 1 / 0.936
1dj3 GDPAdenylosuccinate synthetase, chloroplastic / 0.807
1dj2 GDPAdenylosuccinate synthetase, chloroplastic / 0.749
1loo GTPAdenylosuccinate synthetase isozyme 1 / 0.704
1gp2 GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.702
3cx6 GDPGuanine nucleotide-binding protein subunit alpha-13 / 0.701
3c15 GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.700
4hse ADPChaperone protein ClpB / 0.687
4g5q GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.685
1jx2 ADPMyosin-2 heavy chain / 0.683
1z0a GDPRas-related protein Rab-2A / 0.676
5l3s GNPSignal recognition particle receptor FtsY / 0.675
3tqc ADPPantothenate kinase / 0.671
1b7t ADPMyosin heavy chain, striated muscle / 0.670
1n6l GTPRas-related protein Rab-5A / 0.668
5l3r GCPCell division protein FtsY homolog, chloroplastic / 0.667
1okk GCPSignal recognition particle protein / 0.663
1okk GCPSignal recognition particle receptor FtsY / 0.663
2v7q ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.661
2gks ADPProbable bifunctional SAT/APS kinase 2.7.1.25 0.658
4db1 ANPMyosin-7 / 0.656
4b7b ADPKinesin-like protein KIF11 / 0.655
3kfl ME8Putative methionyl-tRNA synthetase / 0.653
4lrw GDPGTPase KRas / 0.652
5fsi 8DG7,8-dihydro-8-oxoguanine triphosphatase 3.6.1.55 0.652