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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mep BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1mep BTNStreptavidin / 0.990
3ry2 BTNStreptavidin / 0.932
2izh BTNStreptavidin / 0.925
2y3f BTNStreptavidin / 0.924
1mk5 BTNStreptavidin / 0.923
2izf BTNStreptavidin / 0.923
3wyp BSOStreptavidin / 0.913
1luq BTNStreptavidin / 0.901
1swe BTNStreptavidin / 0.894
3wzn BTNStreptavidin / 0.892
1df8 BTNStreptavidin / 0.890
3wyq BTNStreptavidin / 0.884
2zsc BTNTamavidin2 / 0.880
4gda BTNStreptavidin / 0.879
2izi BTNStreptavidin / 0.877
1nqm BTNStreptavidin / 0.871
2rtd BTNStreptavidin / 0.870
2izg BTNStreptavidin / 0.869
2izj BTNStreptavidin / 0.866
1nc9 IMIStreptavidin / 0.860
1i9h BNIStreptavidin / 0.858
2rtg BTNStreptavidin / 0.854
3rdo BTNStreptavidin / 0.854
1rxj BNIStreptavidin / 0.852
2rtf BTNStreptavidin / 0.849
4gd9 BTNStreptavidin / 0.848
1n9m BTNStreptavidin / 0.847
4z28 BTNHoefavidin / 0.841
4dne DTBStreptavidin / 0.839
2rte BTNStreptavidin / 0.838
3rdq DTBStreptavidin / 0.827
2izl IMIStreptavidin / 0.818
1swt BTNStreptavidin / 0.813
1swr BTNStreptavidin / 0.812
1n43 BTNStreptavidin / 0.811
1swg BTNStreptavidin / 0.810
1lcz BH7Streptavidin / 0.809
2rtm IMIStreptavidin / 0.808
2rtq IMIStreptavidin / 0.807
4bx7 B4FStreptavidin / 0.807
2c4i BTNAvidin / 0.800
2rtr IMIStreptavidin / 0.795
4yvb BTNStreptavidin / 0.795
1lcw SHMStreptavidin / 0.789
2fhl BNIAvidin-related protein 4/5 / 0.768
2fhn BNIAvidin-related protein 4/5 / 0.766
1y52 BTNAvidin-related protein 4/5 / 0.765
4bcs BTNAvidin-related protein 4/5 / 0.765
1stp BTNStreptavidin / 0.764
1swp BTNStreptavidin / 0.764
2uyw BTNAvd protein / 0.762
3t2w BTNAvidin/streptavidin / 0.761
1swp BTQStreptavidin / 0.757
1rxh BNIStreptavidin / 0.741
1swd BTNStreptavidin / 0.736
1ndj BTNStreptavidin / 0.733
3vhi VHIAvidin / 0.720
2uz2 BTNAvd protein / 0.715
3ew2 BTNHypothetical conserved protein / 0.703
4bj8 BTNAvidin / 0.703
2jgs BTNAvidin / 0.693
1swn BTNStreptavidin / 0.690
2rto IMIStreptavidin / 0.675
2rtl IMIStreptavidin / 0.668
3vgw NVZAvidin / 0.667
3vhm NPKAvidin / 0.667