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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mbz IOT Carboxyethyl-arginine beta-lactam-synthase 6.3.3.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1mbz IOTCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 1.285
4xfj ANPArgininosuccinate synthase / 0.689
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.668
2emr SAHDiphthine synthase / 0.667
1mc1 PCXCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.653
2dxw SAHDiphthine synthase / 0.652
2e07 SAHDiphthine synthase / 0.652
2e7r SAHDiphthine synthase / 0.652
2dxv SAHDiphthine synthase / 0.651
2dxx SAHDiphthine synthase / 0.651
4f99 ADPCell division cycle 7-related protein kinase 2.7.11.1 0.651
2e08 SAHDiphthine synthase / 0.650
2hut SAHDiphthine synthase / 0.650
2owk SAHDiphthine synthase / 0.650