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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1maq PGU Aspartate aminotransferase, mitochondrial 2.6.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 1.187
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 1.082
1map KETAspartate aminotransferase, mitochondrial 2.6.1.1 1.064
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 1.023
3qpg 3QPAspartate aminotransferase 2.6.1.1 0.959
1cq7 PY5Aspartate aminotransferase 2.6.1.1 0.949
1ahg TYR_PLPAspartate aminotransferase 2.6.1.1 0.938
1arg PPDAspartate aminotransferase 2.6.1.1 0.931
1cq8 PY6Aspartate aminotransferase 2.6.1.1 0.907
1x28 PGUAspartate aminotransferase 2.6.1.1 0.899
1ivr CBAAspartate aminotransferase, mitochondrial 2.6.1.1 0.888
1arh PPDAspartate aminotransferase 2.6.1.1 0.843
1oxo IK2Aspartate aminotransferase, mitochondrial 2.6.1.1 0.818
4w5k PLPAspartate aminotransferase, mitochondrial / 0.817
4ge4 0KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.815
4dbc 3QPAspartate aminotransferase 2.6.1.1 0.805
4ge9 0L0Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.797
1cq6 PY4Aspartate aminotransferase 2.6.1.1 0.778
3ele PLPAminotransferase / 0.751
1aka PLPAspartate aminotransferase, mitochondrial 2.6.1.1 0.731
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.718
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.712
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.709
3aej AA5Methionine gamma-lyase / 0.691
1cl2 PPGCystathionine beta-lyase MetC 4.4.1.8 0.689
3b1d PLSBetaC-S lyase / 0.689
4fl0 PLPAminotransferase ALD1, chloroplastic 2.6.1 0.684
1s0j MUSTrans-sialidase / 0.679
4rkd KETAminotransferase / 0.677
1u08 PLPMethionine aminotransferase / 0.664
4je5 PLPAromatic/aminoadipate aminotransferase 1 2.6.1.39 0.656
5irn ADPNucleotide binding oligomerization domain containing 2 / 0.656
1c7o PPGHemolysin / 0.655
2rds 1PL1-deoxypentalenic acid 11-beta-hydroxylase 1.14.11.35 0.652