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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1m9k 7NI Nitric oxide synthase, endothelial 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1m9k 7NINitric oxide synthase, endothelial 1.14.13.39 0.801
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1m9r INENitric oxide synthase, endothelial 1.14.13.39 0.736
4uqs INENitric oxide synthase oxygenase 1.14.13.165 0.699
1m8h 6NINitric oxide synthase, inducible 1.14.13.39 0.667
4e5f 0N7Polymerase acidic protein / 0.660
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.659
4blt APCNTPase P4 / 0.656
2opn SUFFarnesyl pyrophosphate synthase 2.5.1.10 0.654
1m9t INENitric oxide synthase, inducible 1.14.13.39 0.650