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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1m2j APR NAD-dependent protein deacylase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1m2j APRNAD-dependent protein deacylase 1 / 1.203
1m2g APRNAD-dependent protein deacylase 1 / 1.180
1m2h APRNAD-dependent protein deacylase 1 / 1.148
1m2k APRNAD-dependent protein deacylase 1 / 1.121
5d7o AR6NAD-dependent protein deacetylase sirtuin-2 3.5.1 0.977
5d7p AR6NAD-dependent protein deacetylase sirtuin-2 3.5.1 0.935
2h59 APRNAD-dependent protein deacetylase / 0.918
1s7g APRNAD-dependent protein deacylase 2 / 0.912
4bvh AR6NAD-dependent protein deacetylase sirtuin-3, mitochondrial 3.5.1 0.895
2h59 3ODNAD-dependent protein deacetylase / 0.894
3zg6 APRNAD-dependent protein deacetylase sirtuin-6 3.5.1 0.894
1yc2 APRNAD-dependent protein deacylase 2 / 0.875
4bvb AR6NAD-dependent protein deacetylase sirtuin-3, mitochondrial 3.5.1 0.866
5d7q AR6NAD-dependent protein deacetylase sirtuin-2 3.5.1 0.856
2b4y APRNAD-dependent protein deacylase sirtuin-5, mitochondrial / 0.775
4zzj CNANAD-dependent protein deacetylase sirtuin-1 3.5.1 0.739
4g1c CNANAD-dependent protein deacylase sirtuin-5, mitochondrial / 0.717
4iao APRNAD-dependent histone deacetylase SIR2 3.5.1 0.707
1o97 FADElectron transfer flavoprotein subunit alpha / 0.702
2qqf A1RNAD-dependent protein deacetylase HST2 3.5.1 0.702
2pan FADGlyoxylate carboligase 4.1.1.47 0.689
1s7g NADNAD-dependent protein deacylase 2 / 0.686
2od7 A1RNAD-dependent protein deacetylase HST2 3.5.1 0.686
1efp FADElectron transfer flavoprotein subunit alpha / 0.684
1jsc FADAcetolactate synthase catalytic subunit, mitochondrial 2.2.1.6 0.677
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.668
1yc2 NADNAD-dependent protein deacylase 2 / 0.661
1v5e FADPyruvate oxidase / 0.656
4fzv SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.656
3d4b DZDNAD-dependent protein deacetylase / 0.652
1jqd SAHHistamine N-methyltransferase 2.1.1.8 0.651