sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1m1d | LYX | HAT A1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1m1d | LYX | HAT A1 | / | 1.330 | |
| 1qsr | ACO | HAT A1 | / | 0.822 | |
| 1pu9 | COA | HAT A1 | / | 0.797 | |
| 1pua | COA | HAT A1 | / | 0.785 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.783 | |
| 1z4r | ACO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.781 | |
| 1cm0 | COA | Histone acetyltransferase KAT2B | 2.3.1.48 | 0.780 | |
| 4hkf | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.764 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.763 | |
| 1qsn | COA | HAT A1 | / | 0.762 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.756 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.756 | |
| 3bj7 | COA | Diamine acetyltransferase 1 | / | 0.737 | |
| 4u9z | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.737 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.736 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.733 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.729 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.718 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.717 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.714 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.714 | |
| 1l0c | COT | Serotonin N-acetyltransferase | / | 0.714 | |
| 5kgh | ACO | Predicted acetyltransferase | / | 0.714 | |
| 3vwd | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.711 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.709 | |
| 4mxe | ACO | N-acetyltransferase ESCO1 | 2.3.1 | 0.703 | |
| 1kuy | COT | Serotonin N-acetyltransferase | / | 0.702 | |
| 2bsw | CAO | Probable acetyltransferase | / | 0.702 | |
| 1mja | COA | Histone acetyltransferase ESA1 | / | 0.701 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.701 | |
| 4b5o | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.700 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.698 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.696 | |
| 2jdd | ACO | Probable acetyltransferase | / | 0.694 | |
| 2fiw | ACO | GCN5-related N-acetyltransferase:Aminotransferase, class-II | / | 0.693 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.690 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.688 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.685 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.685 | |
| 2r8v | ACO | Amino-acid acetyltransferase | / | 0.683 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.683 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.682 | |
| 3gy9 | COA | GCN5-related N-acetyltransferase | / | 0.680 | |
| 3q33 | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 0.680 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.677 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.677 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.677 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.676 | |
| 4u9y | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.676 | |
| 1p0h | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.674 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.673 | |
| 4kub | COA | Uncharacterized protein | / | 0.672 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.671 | |
| 2x7b | COA | N-alpha-acetyltransferase | 2.3.1 | 0.670 | |
| 2zfn | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 0.670 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.670 | |
| 2cy2 | ACO | Probable acetyltransferase | / | 0.669 | |
| 3r96 | ACO | MccE protein | / | 0.668 | |
| 4cs0 | ACO | PanD regulatory factor | / | 0.667 | |
| 1s3z | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.665 | |
| 4xnh | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.664 | |
| 2vzz | SCA | Putative succinyl-CoA transferase Rv0802c | 2.8.3 | 0.663 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.662 | |
| 4if5 | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.661 | |
| 1s7n | COA | Acetyl transferase | / | 0.659 | |
| 3mgd | ACO | Predicted acetyltransferase | / | 0.659 | |
| 5kf8 | COA | Predicted acetyltransferase | / | 0.659 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.658 | |
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.657 | |
| 4kvm | SER_ALA_SER_GLU_1XE | N-terminal acetyltransferase A complex catalytic subunit ard1 | 2.3.1.88 | 0.657 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.656 | |
| 1s5k | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.655 | |
| 2zpa | ACO | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.655 | |
| 4jwp | ACO | GCN5-related N-acetyltransferase | / | 0.654 | |
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 | 0.654 | |
| 2prb | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.653 | |
| 3f0a | ACO | Spermidine N(1)-acetyltransferase | / | 0.653 | |
| 4ag9 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.653 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.652 | |
| 2cns | ACO | Ribosomal-protein-alanine acetyltransferase | / | 0.651 |