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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1m00 H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.948
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.939
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.937
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.935
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.930
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.925
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.924
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.923
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.922
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.911
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.909
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.909
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.909
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.908
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.908
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.908
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.908
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.908
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.907
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.907
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.907
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.907
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.907
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.906
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.906
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.905
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.905
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.904
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.904
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.903
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.902
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.902
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.902
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.902
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.901
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.901
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.901
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.901
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.901
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.901
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.900
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.899
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.898
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.896
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.895
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.894
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.893
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.892
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.891
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.890
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.890
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.887
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.884
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.883
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.883
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.882
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.881
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.881
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.881
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.879
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.877
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.874
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.873
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.873
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.870
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.869
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.868
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.868
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.867
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.866
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.866
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.865
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.864
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.863
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.862
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.861
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.855
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.854
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.850
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.848
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.847
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.847
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.847
3png H4BNitric oxide synthase, brain 1.14.13.39 0.846
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.845
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.839
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.839
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.838
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.837
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.833
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.833
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.828
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.828
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.826
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.825
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.807
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.802
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.799
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.795
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.793
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.791
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.773
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.757
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.756
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.730
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.722
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.718
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.712
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.705
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.705
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.699
3e7g H4BNitric oxide synthase, inducible 1.14.13.39 0.675
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.668
4ug7 H4BNitric oxide synthase oxygenase 1.14.13.165 0.657