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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1luq BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1luq BTNStreptavidin / 0.999
3wyq BTNStreptavidin / 0.993
1mk5 BTNStreptavidin / 0.990
2y3f BTNStreptavidin / 0.990
3ry2 BTNStreptavidin / 0.990
2izh BTNStreptavidin / 0.982
2izf BTNStreptavidin / 0.981
1nqm BTNStreptavidin / 0.980
1df8 BTNStreptavidin / 0.976
2izi BTNStreptavidin / 0.973
4gda BTNStreptavidin / 0.969
3wyp BSOStreptavidin / 0.960
1swe BTNStreptavidin / 0.955
2rtg BTNStreptavidin / 0.954
4yvb BTNStreptavidin / 0.953
2izj BTNStreptavidin / 0.952
2zsc BTNTamavidin2 / 0.943
1n43 BTNStreptavidin / 0.942
2rtd BTNStreptavidin / 0.938
3wzn BTNStreptavidin / 0.930
1i9h BNIStreptavidin / 0.927
1n9m BTNStreptavidin / 0.924
4gd9 BTNStreptavidin / 0.920
3rdo BTNStreptavidin / 0.914
2rtf BTNStreptavidin / 0.907
4bx7 B4FStreptavidin / 0.905
4dne DTBStreptavidin / 0.904
1swg BTNStreptavidin / 0.903
1mep BTNStreptavidin / 0.901
4z28 BTNHoefavidin / 0.901
1rxj BNIStreptavidin / 0.900
1ndj BTNStreptavidin / 0.891
2rte BTNStreptavidin / 0.890
3rdq DTBStreptavidin / 0.887
2izg BTNStreptavidin / 0.879
1stp BTNStreptavidin / 0.875
1lcw SHMStreptavidin / 0.870
2rtm IMIStreptavidin / 0.863
1swt BTNStreptavidin / 0.850
2uyw BTNAvd protein / 0.850
1lcz BH7Streptavidin / 0.845
2rtr IMIStreptavidin / 0.837
1swp BTQStreptavidin / 0.836
2izl IMIStreptavidin / 0.834
3t2w BTNAvidin/streptavidin / 0.830
1nc9 IMIStreptavidin / 0.827
2rtq IMIStreptavidin / 0.823
2rtp IMIStreptavidin / 0.812
1swd BTNStreptavidin / 0.806
1swn BTNStreptavidin / 0.804
1swr BTNStreptavidin / 0.803
4bcs BTNAvidin-related protein 4/5 / 0.799
1y52 BTNAvidin-related protein 4/5 / 0.798
2rtn IMIStreptavidin / 0.798
2fhl BNIAvidin-related protein 4/5 / 0.796
2fhn BNIAvidin-related protein 4/5 / 0.794
1swp BTNStreptavidin / 0.791
3ew2 BTNHypothetical conserved protein / 0.787
2rto IMIStreptavidin / 0.774
3vhi VHIAvidin / 0.760
4bj8 BTNAvidin / 0.760
2c4i BTNAvidin / 0.728
1rxh BNIStreptavidin / 0.715
1ij8 BNIAvidin / 0.714
3vgw NVZAvidin / 0.713
3vhh VHHAvidin / 0.708
2uz2 BTNAvd protein / 0.697
2rtl IMIStreptavidin / 0.692
1avd BTNAvidin / 0.678
3vhm NPKAvidin / 0.667
4ggz BTNBll1558 protein / 0.656
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 0.650
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 0.650