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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lol XMP Orotidine 5'-phosphate decarboxylase 4.1.1.23

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lol XMPOrotidine 5'-phosphate decarboxylase 4.1.1.23 0.932
1lp6 C5POrotidine 5'-phosphate decarboxylase 4.1.1.23 0.768
2czf XMPOrotidine 5'-phosphate decarboxylase 4.1.1.23 0.759
3uwq U5POrotidine 5'-phosphate decarboxylase / 0.698
2yyu C5POrotidine 5'-phosphate decarboxylase / 0.668
4nt0 3DUOrotidine 5'-phosphate decarboxylase 4.1.1.23 0.659
1gjv AGS[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial 2.7.11.4 0.653