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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1llw FMN Ferredoxin-dependent glutamate synthase 2 1.4.7.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1llw FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 1.067
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.989
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.937
1llz FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.887
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.814
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.812
2z6i FMN2-nitropropane dioxygenase / 0.785
3l5l FMNXenobiotic reductase / 0.781
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.775
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.774
4utm FNRXenobiotic reductase / 0.770
4uth FMNXenobiotic reductase / 0.767
1ea0 FMNGlutamate synthase [NADPH] large chain 1.4.1.13 0.766
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.752
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.751
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.748
4utl FNRXenobiotic reductase / 0.740
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.736
4yco FMNtRNA-dihydrouridine(16) synthase / 0.732
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.729
1z48 FMNNADPH dehydrogenase / 0.728
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.728
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.726
1z44 FMNNADPH dehydrogenase / 0.720
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.718
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.716
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.716
3hf3 FMNChromate reductase / 0.715
1dor FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.713
3gr8 FMNNADPH dehydrogenase / 0.709
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.706
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.705
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.704
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.702
3n19 FNRXenobiotic reductase / 0.699
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.698
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.692
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.690
4cw5 FMNDfnA / 0.690
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.688
2gjn FMNNitronate monooxygenase 1.13.12.16 0.683
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.682
3l67 FMNXenobiotic reductase / 0.679
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.678
2zrx FMNIsopentenyl-diphosphate delta-isomerase / 0.676
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.673
5cpm FNRNADH:flavin oxidoreductase / 0.673
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.668
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.667
3oix FMNDihydroorotate dehydrogenase / 0.667
4q4k FMNUncharacterized protein / 0.665
4z38 FMNMlnA / 0.665
2abb FMNPentaerythritol tetranitrate reductase / 0.662
1z41 FMNNADPH dehydrogenase / 0.661
2zrz FNRIsopentenyl-diphosphate delta-isomerase / 0.661
3p62 FMNPentaerythritol tetranitrate reductase / 0.661
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.660
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.657
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.657
3bw3 FMNPutative 2-nitropropane dioxygenase / 0.656
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.654
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.653
2gjl FMNNitronate monooxygenase 1.13.12.16 0.653
3fsu FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.653
1qcw FNSCytochrome b2, mitochondrial 1.1.2.3 0.652
4nev FADTrypanothione reductase / 0.652
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.650
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.650
3f03 FMNPentaerythritol tetranitrate reductase / 0.650