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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lho AOM Sex hormone-binding globulin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lho AOMSex hormone-binding globulin / 1.224
1lhn AONSex hormone-binding globulin / 1.061
1f5f DHTSex hormone-binding globulin / 0.979
1kdk DHTSex hormone-binding globulin / 0.845
1d2s DHTSex hormone-binding globulin / 0.804
3uzx AOM3-oxo-5-beta-steroid 4-dehydrogenase / 0.719
4ofr DHTAndrogen receptor / 0.715
1t5z DHTAndrogen receptor / 0.711
4ofu DHTAndrogen receptor / 0.706
1lri CLRBeta-elicitin cryptogein / 0.703
2piv DHTAndrogen receptor / 0.703
1kdm DHTSex hormone-binding globulin / 0.701
2pit DHTAndrogen receptor / 0.700
2piw DHTAndrogen receptor / 0.700
3uzz ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.700
2ylp TESAndrogen receptor / 0.692
2pir DHTAndrogen receptor / 0.691
3uzx AOX3-oxo-5-beta-steroid 4-dehydrogenase / 0.691
1t79 DHTAndrogen receptor / 0.690
1t7r DHTAndrogen receptor / 0.689
5hyr ESTEstrogen receptor / 0.689
1t7f DHTAndrogen receptor / 0.688
2g5o DRQEstrogen receptor / 0.686
1t76 DHTAndrogen receptor / 0.684
4oez DHTAndrogen receptor / 0.684
1e3r ANDSteroid Delta-isomerase 5.3.3.1 0.680
1jtv TESEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.680
1coy ANDCholesterol oxidase 1.1.3.6 0.678
2b1z 17MEstrogen receptor / 0.677
2q7i TESAndrogen receptor / 0.677
2q7k TESAndrogen receptor / 0.677
2yja ESTEstrogen receptor / 0.675
3iw1 ASDSteroid C26-monooxygenase 1.14.13.141 0.674
1xj7 DHTAndrogen receptor / 0.673
2ocf ESTEstrogen receptor / 0.673
1t74 DHTAndrogen receptor / 0.672
2ama DHTAndrogen receptor / 0.672
5dx3 ESTEstrogen receptor / 0.671
4oey DHTAndrogen receptor / 0.670
2pkl DHTAndrogen receptor / 0.669
3q95 ESLEstrogen receptor / 0.669
4oea DHTAndrogen receptor / 0.669
1t7m DHTAndrogen receptor / 0.668
1t73 DHTAndrogen receptor / 0.665
4at2 ASDPossible succinate dehydrogenase / 0.664
2pio DHTAndrogen receptor / 0.663
2piq DHTAndrogen receptor / 0.663
4pxm ESTEstrogen receptor / 0.661
2j7x ESTEstrogen receptor beta / 0.658
1y5r C0RCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.657
1t65 DHTAndrogen receptor / 0.656
2qgt EEDEstrogen receptor / 0.655
3cmf PDN3-oxo-5-beta-steroid 4-dehydrogenase / 0.654
2ft9 CHDFatty acid-binding protein 2, liver / 0.652
1o1v TCHGastrotropin / 0.650
2z4j DHTAndrogen receptor / 0.650