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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lbb KAI Glutamate receptor 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lbb KAIGlutamate receptor 2 / 1.054
4bdr KAIGlutamate receptor ionotropic, kainate 2 / 0.966
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.942
3c34 KAIGlutamate receptor ionotropic, kainate 1 / 0.941
1fw0 KAIGlutamate receptor 2 / 0.936
4f3g KAIGlutamate receptor 3 / 0.923
3kfm KAIGlutamate receptor 4 / 0.918
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 0.917
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.912
4f31 KAIGlutamate receptor 3 / 0.912
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.822
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 0.807
2wky IBCGlutamate receptor ionotropic, kainate 1 / 0.739
4gxs 0YSGlutamate receptor 2 / 0.688
3rt8 CWDGlutamate receptor 3 / 0.684
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.683
4kdr SAHUbiquinone biosynthesis O-methyltransferase / 0.676
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.666
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.661
2fzj DH3Dihydrofolate reductase 1.5.1.3 0.655
1gir NDPIota toxin component Ia / 0.654
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.654
3vp6 HLDGlutamate decarboxylase 1 4.1.1.15 0.652