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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1l7e NAI NAD(P) transhydrogenase subunit alpha part 1 1.6.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1l7e NAINAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 1.047
1u28 NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.788
2oor NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.762
1f8g NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.759
1u2g APRNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.752
1hzz NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.717
1ptj SNDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.717
2fsv NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.708
2oo5 TXDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.706
1x15 NADNAD(P) transhydrogenase subunit alpha 1.6.1.2 0.689
2qg4 NADUDP-glucose 6-dehydrogenase 1.1.1.22 0.671
3lcc SAHThiocyanate methyltransferase 1 / 0.668
1y8q ATPSUMO-activating enzyme subunit 2 6.3.2 0.663
1jki NAIInositol-3-phosphate synthase 5.5.1.4 0.659
3fri SAH16S rRNA methylase / 0.659
3wv7 ADPHmd co-occurring protein HcgE / 0.659
1bc5 SAHChemotaxis protein methyltransferase 2.1.1.80 0.656
1p1h NADInositol-3-phosphate synthase 5.5.1.4 0.653
3k7m FAD6-hydroxy-L-nicotine oxidase / 0.653
3wv8 ATPHmd co-occurring protein HcgE / 0.653
4yuz S4MSpermidine synthase, putative / 0.652
3ou6 SAMSAM-dependent methyltransferase / 0.650