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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kqo DND Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 2.7.7.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1kqo DNDNicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 2.7.7.1 1.359
1kqn NADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 2.7.7.1 1.018
1nuq NXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.876
1nuu NADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.856
1kr2 TADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 2.7.7.1 0.811
1nup NMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.733
1m8j NADNicotinamide-nucleotide adenylyltransferase 2.7.7.1 0.669
3l0n S5PUridine 5'-monophosphate synthase 4.1.1.23 0.657
4fr8 ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.657
2qtr NXXProbable nicotinate-nucleotide adenylyltransferase / 0.655
1o9j NADAldehyde dehydrogenase, cytosolic 1 1.2.1.3 0.653
3fd6 ADPSelenide, water dikinase 1 2.7.9.3 0.650