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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1knu YPA Peroxisome proliferator-activated receptor gamma

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1knu YPAPeroxisome proliferator-activated receptor gamma / 1.227
4xld BRLPeroxisome proliferator-activated receptor gamma / 0.781
1zgy BRLPeroxisome proliferator-activated receptor gamma / 0.770
4ema BRLPeroxisome proliferator-activated receptor gamma / 0.770
1fm6 BRLPeroxisome proliferator-activated receptor gamma / 0.763
2gtk 208Peroxisome proliferator-activated receptor gamma / 0.738
2q8s L92Peroxisome proliferator-activated receptor gamma / 0.713
1i7i AZ2Peroxisome proliferator-activated receptor gamma / 0.712
3vjh J35Peroxisome proliferator-activated receptor gamma / 0.709
1nyx DRFPeroxisome proliferator-activated receptor gamma / 0.697
3vsp EK8Peroxisome proliferator-activated receptor gamma / 0.671
4o8f BRLPeroxisome proliferator-activated receptor gamma / 0.657