sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1kdk | DHT | Sex hormone-binding globulin |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1kdk | DHT | Sex hormone-binding globulin | / | 1.110 | |
| 1d2s | DHT | Sex hormone-binding globulin | / | 1.062 | |
| 1f5f | DHT | Sex hormone-binding globulin | / | 1.045 | |
| 1kdm | DHT | Sex hormone-binding globulin | / | 0.998 | |
| 1lhv | NOG | Sex hormone-binding globulin | / | 0.907 | |
| 1lho | AOM | Sex hormone-binding globulin | / | 0.845 | |
| 1lhn | AON | Sex hormone-binding globulin | / | 0.829 | |
| 2ylo | TES | Androgen receptor | / | 0.721 | |
| 1t7m | DHT | Androgen receptor | / | 0.714 | |
| 3cot | STR | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.697 | |
| 3s79 | ASD | Aromatase | 1.14.14.14 | 0.696 | |
| 3eqm | ASD | Aromatase | 1.14.14.14 | 0.693 | |
| 2qpy | DHT | Androgen receptor | / | 0.690 | |
| 4jbt | ASD | Cytochrome P450 monooxygenase | / | 0.690 | |
| 4j6d | TES | Cytochrome P450 monooxygenase | / | 0.689 | |
| 3uzz | TES | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.684 | |
| 3nuv | ASD | Steroid Delta-isomerase | 5.3.3.1 | 0.680 | |
| 4at2 | ASD | Possible succinate dehydrogenase | / | 0.677 | |
| 1t7f | DHT | Androgen receptor | / | 0.676 | |
| 2aba | STR | Pentaerythritol tetranitrate reductase | / | 0.672 | |
| 3iw1 | ASD | Steroid C26-monooxygenase | 1.14.13.141 | 0.672 | |
| 4xo7 | ASD | Aldo-keto reductase family 1 member C2 | / | 0.669 | |
| 4ple | CPS | Nuclear receptor subfamily 5 group A member 2 | / | 0.666 | |
| 3w5r | LOA | Vitamin D3 receptor | / | 0.661 | |
| 1fds | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.659 | |
| 3nhx | ASD | Steroid Delta-isomerase | 5.3.3.1 | 0.659 | |
| 4e5l | DBH | Polymerase acidic protein | / | 0.659 | |
| 1lke | DOG | Bilin-binding protein | / | 0.658 | |
| 4j6c | STR | Cytochrome P450 monooxygenase | / | 0.657 | |
| 1zhy | CLR | Oxysterol-binding protein homolog 4 | / | 0.656 | |
| 4j6b | PLO | Cytochrome P450 monooxygenase | / | 0.656 | |
| 2mm3 | CHO | Gastrotropin | / | 0.655 | |
| 3oll | EST | Estrogen receptor beta | / | 0.651 |