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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kbj FMN Cytochrome b2, mitochondrial 1.1.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 1.337
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 1.189
1fcb FMNCytochrome b2, mitochondrial 1.1.2.3 1.171
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 1.133
1qcw FNSCytochrome b2, mitochondrial 1.1.2.3 0.988
1szg FNSCytochrome b2, mitochondrial 1.1.2.3 0.948
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 0.926
4yl2 FMNLactate oxidase / 0.895
4rje FNRLactate oxidase / 0.883
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.870
2e77 FMNLactate oxidase / 0.869
2oz0 FMNCytochrome b2, mitochondrial 1.1.2.3 0.869
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.857
2j6x FMNLactate oxidase / 0.853
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.842
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.840
2nli FMNLactate oxidase / 0.839
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.838
3p74 FMNPentaerythritol tetranitrate reductase / 0.837
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.828
3vkj FNRIsopentenyl-diphosphate delta-isomerase / 0.827
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.824
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.814
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.809
2h8x FMNXenA / 0.801
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.801
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.794
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.776
4utm FNRXenobiotic reductase / 0.773
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.770
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.769
5cpm FNRNADH:flavin oxidoreductase / 0.768
4uth FMNXenobiotic reductase / 0.765
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.762
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.759
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.758
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.757
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.754
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.750
3p82 FMNPentaerythritol tetranitrate reductase / 0.750
2zfa FMNLactate oxidase / 0.749
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.749
4yco FMNtRNA-dihydrouridine(16) synthase / 0.747
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.746
3p62 FMNPentaerythritol tetranitrate reductase / 0.745
1k02 FMNNADPH dehydrogenase 1 1.6.99.1 0.744
1vhn FMNtRNA-dihydrouridine synthase / 0.744
3l67 FMNXenobiotic reductase / 0.743
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.742
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.740
5ebu FMNLactate oxidase / 0.738
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.736
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.735
3l5l FMNXenobiotic reductase / 0.733
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.732
3atz FMNProstaglandin F2a synthase / 0.730
1gwj FMNMorphinone reductase / 0.729
3aty FMNProstaglandin F2a synthase / 0.729
4e2b FMNDehydrogenase / 0.729
4e2d FMNDehydrogenase / 0.729
1h51 FMNPentaerythritol tetranitrate reductase / 0.728
4cw5 FMNDfnA / 0.724
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.721
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.720
3n19 FNRXenobiotic reductase / 0.719
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.719
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.717
3n14 FMNXenobiotic reductase / 0.717
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.716
1h63 FMNPentaerythritol tetranitrate reductase / 0.714
2zrz FNRIsopentenyl-diphosphate delta-isomerase / 0.714
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.713
3gka FMNN-ethylmaleimide reductase / 0.712
4jic FMNGTN Reductase / 0.711
4m5p FMNNADPH dehydrogenase / 0.707
2gjl FMNNitronate monooxygenase 1.13.12.16 0.706
3p84 FMNPentaerythritol tetranitrate reductase / 0.705
3p8j FMNPentaerythritol tetranitrate reductase / 0.705
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.705
3tjl FMNNADPH dehydrogenase / 0.703
4qai FMNNADPH dehydrogenase / 0.703
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.697
3f03 FMNPentaerythritol tetranitrate reductase / 0.695
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.695
4z38 FMNMlnA / 0.695
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.692
1z48 FMNNADPH dehydrogenase / 0.692
2du2 FMNLactate oxidase / 0.691
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.690
4xwz FADFructosyl amine:oxygen oxidoreductase / 0.690
4df2 FMNNADPH dehydrogenase / 0.689
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.688
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.688
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.686
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.685
1llw FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.682
1z41 FMNNADPH dehydrogenase / 0.681
2abb FMNPentaerythritol tetranitrate reductase / 0.681
2zrx FMNIsopentenyl-diphosphate delta-isomerase / 0.679
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.678
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.678
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.678
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.674
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.674
1vyr FMNPentaerythritol tetranitrate reductase / 0.668
1h50 FMNPentaerythritol tetranitrate reductase / 0.666
1t5b FMNFMN-dependent NADH-azoreductase / 0.664
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.664
3p8i FMNPentaerythritol tetranitrate reductase / 0.664
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.662
4tmc FMNOld yellow enzyme / 0.661
2ohi FMNType A flavoprotein FprA 1 0.656
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.656
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.655
1llz FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.653
1q6n P90Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.653
4utl FNRXenobiotic reductase / 0.652
1ndc TYDNucleoside diphosphate kinase, cytosolic 2.7.4.6 0.651