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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1k4m NAD Nicotinate-nucleotide adenylyltransferase 2.7.7.18

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1k4m NADNicotinate-nucleotide adenylyltransferase 2.7.7.18 1.261
2qtr NXXProbable nicotinate-nucleotide adenylyltransferase / 0.836
4wso NADProbable nicotinate-nucleotide adenylyltransferase / 0.828
2h29 DNDProbable nicotinate-nucleotide adenylyltransferase / 0.789
2h2a DNDProbable nicotinate-nucleotide adenylyltransferase / 0.788
1jed ADPSulfate adenylyltransferase / 0.698
3ag6 PAJPantothenate synthetase / 0.683
1xjq ADPBifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 2.7.1.25 0.661
2qjo NADBifunctional NMN adenylyltransferase/Nudix hydrolase 2.7.7.1 0.650