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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1k4h APQ Queuine tRNA-ribosyltransferase 2.4.2.29

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1k4h APQQueuine tRNA-ribosyltransferase 2.4.2.29 0.884
1k4g AIQQueuine tRNA-ribosyltransferase 2.4.2.29 0.754
1y5x E89Queuine tRNA-ribosyltransferase 2.4.2.29 0.684
1q63 AIQQueuine tRNA-ribosyltransferase 2.4.2.29 0.678
1r5y DQUQueuine tRNA-ribosyltransferase 2.4.2.29 0.666
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4e5f 0N7Polymerase acidic protein / 0.657