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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1k0c GTB Transcriptional regulator URE2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1k0c GTBTranscriptional regulator URE2 / 1.115
2aaw GTXGlutathione S-transferase 2.5.1.18 0.774
2imk GTXAGAP009194-PA / 0.769
1pn9 GTXGlutathione S-transferase 1, isoform D 2.5.1.18 0.761
3f63 GTXGlutathione transferase GST1-4 / 0.757
2glr GTXGlutathione S-transferase P 1 2.5.1.18 0.754
2a2s GSNGlutathione S-transferase P 2.5.1.18 0.745
1k0a GTXTranscriptional regulator URE2 / 0.740
2oad GTBGlutathione S-transferase P 1 2.5.1.18 0.739
2c3q GTXGlutathione S-transferase theta-1 2.5.1.18 0.727
2oac GTBGlutathione S-transferase P 1 2.5.1.18 0.724
3g7j GTXGlutathione transferase GST1-4 / 0.718
1gwc GTXGlutathione S-transferase 1 / 0.710
1k3y GTXGlutathione S-transferase A1 2.5.1.18 0.705
1vf2 GTXGlutathione S-transferase 3 2.5.1.18 0.703
1aqx GTDGlutathione S-transferase P 2.5.1.18 0.701
3ik7 BOBGlutathione S-transferase A4 2.5.1.18 0.700
2r3x GTXGlutathione S-transferase A1 2.5.1.18 0.697
1tu8 GTXGlutathione S-transferase 2 2.5.1.18 0.695
1vf3 GDNGlutathione S-transferase 3 2.5.1.18 0.691
2vo4 GTB2,4-D inducible glutathione S-transferase / 0.686
1hna GDNGlutathione S-transferase Mu 2 2.5.1.18 0.680
5agy GTBTau class glutathione S-transferase / 0.677
3o76 GTBGlutathione S-transferase P 1 2.5.1.18 0.674
1k3l GTXGlutathione S-transferase A1 2.5.1.18 0.673
3ktl GTXGlutathione S-transferase A1 2.5.1.18 0.673
1bx9 GLY_GGL_FOEGlutathione S-transferase F2 2.5.1.18 0.672
3ik9 BOBGlutathione S-transferase A1 2.5.1.18 0.672
4iji 99TGlutathione S-transferase-like protein YibF / 0.672
1gss LEEGlutathione S-transferase P 2.5.1.18 0.669
2r6k GTXGlutathione S-transferase A1 2.5.1.18 0.664
1m9a GTXGlutathione S-transferase class-mu 26 kDa isozyme 2.5.1.18 0.660
3frc 0HGGlutathione S-transferase 2.5.1.18 0.658
1gnw GTXGlutathione S-transferase F2 2.5.1.18 0.657
3gur BYGGlutathione S-transferase Mu 2 2.5.1.18 0.651
1aqv 0HGGlutathione S-transferase P 2.5.1.18 0.650