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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1k0a GTX Transcriptional regulator URE2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1k0a GTXTranscriptional regulator URE2 / 1.065
1k0c GTBTranscriptional regulator URE2 / 0.740
2vo4 GTB2,4-D inducible glutathione S-transferase / 0.706
2r6k GTXGlutathione S-transferase A1 2.5.1.18 0.684
1bx9 GLY_GGL_FOEGlutathione S-transferase F2 2.5.1.18 0.680
1k3l GTXGlutathione S-transferase A1 2.5.1.18 0.666
1gnw GTXGlutathione S-transferase F2 2.5.1.18 0.661
1vf2 GTXGlutathione S-transferase 3 2.5.1.18 0.659