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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jtk THU Cytidine deaminase 3.5.4.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1jtk THUCytidine deaminase 3.5.4.5 1.024
1ux0 THUCytidine deaminase 3.5.4.5 1.018
1uwz THUCytidine deaminase 3.5.4.5 0.988
1mq0 BRDCytidine deaminase 3.5.4.5 0.796
2wvj TTPThymidine kinase, cytosolic 2.7.1.21 0.692
5fuv THMThymidine kinase, putative / 0.685
1p6x THMThymidine kinase / 0.662
5fuw THMThymidine kinase, putative / 0.660
1nbu PH2Dihydroneopterin aldolase / 0.657