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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jqi FAD Short-chain specific acyl-CoA dehydrogenase, mitochondrial

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 1.518
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 1.407
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 1.250
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.171
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.114
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.093
2pg0 FADAcyl-CoA dehydrogenase / 1.069
3p4t FAOPutative acyl-CoA dehydrogenase / 1.061
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 1.050
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 1.048
5jsc FADPutative acyl-CoA dehydrogenase / 1.040
3oib FDAPutative acyl-CoA dehydrogenase / 1.029
4iv6 FDAIsovaleryl-CoA dehydrogenase / 1.001
5af7 FADAcyl-CoA dehydrogenase / 1.000
3r7k FDAProbable acyl CoA dehydrogenase / 0.984
4m9a FDAAcyl-CoA dehydrogenase / 0.979
5ahs FADAcyl-CoA dehydrogenase / 0.979
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.978
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.964
2d29 FADAcyl-CoA dehydrogenase / 0.946
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.939
2eba FADPutative glutaryl-CoA dehydrogenase / 0.933
3owa FADAcyl-CoA dehydrogenase / 0.931
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.929
2z1q FADAcyl-CoA dehydrogenase / 0.902
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.897
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.896
2dvl FADAcyl-CoA dehydrogenase / 0.890
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.876
1r2j FADFkbI / 0.809
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.792
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.792
1u8v FAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase / 0.788
4irn FADAnaB / 0.772
3mkh FADNitroalkane oxidase / 0.769
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.768
2fon FADAcyl-coenzyme A oxidase / 0.760
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.755
4kto FADPutative isovaleryl-CoA dehydrogenase protein / 0.751
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.734
3eo8 FMNPutative nitroreductase / 0.723
2reh FADNitroalkane oxidase 1.7.3.1 0.718
4qly FMNEnone reductase CLA-ER / 0.717
2c12 FADNitroalkane oxidase 1.7.3.1 0.714
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.713
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.712
1nb9 RBFRiboflavin kinase 2.7.1.26 0.709
3ge6 FMNNitroreductase / 0.709
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.707
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.699
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.695
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.694
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.692
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.690
3n39 FMNProtein NrdI / 0.689
2yyl FAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component 1.14.14.9 0.686
2h8x FMNXenA / 0.684
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.684
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.683
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.683
1eje FMNProtein MTH_152 / 0.681
4tmb FMNOld yellow enzyme / 0.680
4tmc FMNOld yellow enzyme / 0.680
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.678
2gr3 FADFerredoxin reductase / 0.678
2vxa RBFDodecin / 0.677
1uum FMNDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.676
2yyi FAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component 1.14.14.9 0.676
3mzi FMNActivator of photopigment and puc expression / 0.676
4h4t FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.676
3sqp FADGlutathione reductase, mitochondrial 1.8.1.7 0.675
2v18 FMNDodecin / 0.673
3fcj FADNitroalkane oxidase 1.7.3.1 0.673
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.672
1knr FADL-aspartate oxidase 1.4.3.16 0.672
3n19 FNRXenobiotic reductase / 0.672
3f6r FMNFlavodoxin / 0.671
4hj6 FMNLOV protein / 0.671
1knp FADL-aspartate oxidase 1.4.3.16 0.670
2ohj FMNType A flavoprotein FprA 1 0.669
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.668
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.668
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.668
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.667
3esz FMNFlavodoxin / 0.666
3gg0 FMNUncharacterized protein / 0.666
4h4v FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.666
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.660
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.660
3pxv FMNNitroreductase / 0.659
4hh0 FMNAppA protein / 0.659
2ohi FMNType A flavoprotein FprA 1 0.658
4h4x FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.658
1d7y FADFerredoxin reductase / 0.656
3aty FMNProstaglandin F2a synthase / 0.656
2gqw FADFerredoxin reductase / 0.655
4cnj FADL-amino acid oxidase / 0.655
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.655
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.654
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.653
4ynt FDAGlucose oxidase, putative / 0.653
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.652
1gwj FMNMorphinone reductase / 0.652
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.652
1q1r FADPutidaredoxin reductase 1.18.1.5 0.652
2v5u FMNFlavodoxin / 0.652
5i39 FADL-amino acid deaminase / 0.652
2jb2 FADL-amino acid oxidase / 0.651
4h4r FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.651
4jic FMNGTN Reductase / 0.651
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.651
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.650
1yob FMNFlavodoxin 2 / 0.650
2q9u FMNA-type flavoprotein / 0.650