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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jkf NAD Inositol-3-phosphate synthase 5.5.1.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1jkf NADInositol-3-phosphate synthase 5.5.1.4 1.044
1jki NAIInositol-3-phosphate synthase 5.5.1.4 0.686
3lcc SAHThiocyanate methyltransferase 1 / 0.677
3u81 SAHCatechol O-methyltransferase 2.1.1.6 0.676
4pyn SAHCatechol O-methyltransferase 2.1.1.6 0.676
4iv8 SAMPhosphoethanolamine N-methyltransferase,putative / 0.671
4pyo SAHCatechol O-methyltransferase 2.1.1.6 0.667
1p1h NADInositol-3-phosphate synthase 5.5.1.4 0.664
4jk3 NADUncharacterized protein / 0.662
5e72 SAMN2, N2-dimethylguanosine tRNA methyltransferase / 0.662
2ore SAHDNA adenine methylase 2.1.1.72 0.661
4yv2 S4MSpermidine synthase, putative / 0.661
4yuz S4MSpermidine synthase, putative / 0.659
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.655
2c7q SAHModification methylase HhaI 2.1.1.37 0.655
2q28 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.655
4mwz SAMPhosphoethanolamine N-methyltransferase, putative / 0.655
2o07 MTASpermidine synthase 2.5.1.16 0.654
4g6h NAIRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.650