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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jjt BDS Beta-lactamase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1jjt BDSBeta-lactamase / 1.095
1jje BYSBeta-lactamase / 0.909
1mez GDPAdenylosuccinate synthetase isozyme 1 / 0.679
3gqz GF7Beta-lactamase 3.5.2.6 0.665
3kc0 2T5Fructose-1,6-bisphosphatase 1 3.1.3.11 0.664
4h0d ZZ7Metallo-beta-lactamase type 2 / 0.664
4ram PNMMetallo-beta-lactamase type 2 / 0.663
4kh0 ATPAspartate carbamoyltransferase regulatory chain {ECO:0000256|HAMAP-Rule:MF_00002} / 0.662
1peq TTPRibonucleoside-diphosphate reductase 2 subunit alpha 1.17.4.1 0.657