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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jje BYS Beta-lactamase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1jje BYSBeta-lactamase / 1.078
1jjt BDSBeta-lactamase / 0.909
2oyf IACBasic phospholipase A2 VRV-PL-VIIIa 3.1.1.4 0.672
4fkx CDPNucleoside diphosphate kinase / 0.660
1h8h ATPATP synthase subunit alpha, mitochondrial / 0.659
1h8h ATPATP synthase subunit beta, mitochondrial 3.6.3.14 0.659
4fag GTQGentisate 1,2-dioxygenase / 0.655
4h0d ZZ7Metallo-beta-lactamase type 2 / 0.655
3nw4 GTQGentisate 1,2-dioxygenase / 0.651
3nl1 GTQGentisate 1,2-dioxygenase / 0.650