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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jik 545 Tyrosine--tRNA ligase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1jik 545Tyrosine--tRNA ligase / 1.131
1vbm YSATyrosine--tRNA ligase 6.1.1.1 0.769
2pid YSATyrosine--tRNA ligase, mitochondrial 6.1.1.1 0.768
1jil 485Tyrosine--tRNA ligase / 0.751
3ts1 TYATyrosine--tRNA ligase 6.1.1.1 0.728
1vbn YSATyrosine--tRNA ligase 6.1.1.1 0.686
2j5b TYETyrosine--tRNA ligase 6.1.1.1 0.650