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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ja0 FAD NADPH--cytochrome P450 reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ja0 FADNADPH--cytochrome P450 reductase / 1.311
3ojw FADNADPH--cytochrome P450 reductase / 1.202
1ja1 FADNADPH--cytochrome P450 reductase / 1.175
3qfs FADNADPH--cytochrome P450 reductase / 1.162
4yaf FADNADPH--cytochrome P450 reductase / 1.109
4y9u FADNADPH--cytochrome P450 reductase / 1.107
4y7c FADNADPH--cytochrome P450 reductase / 1.101
1j9z FADNADPH--cytochrome P450 reductase / 1.089
3ojx FADNADPH--cytochrome P450 reductase / 1.074
4yau FADNADPH--cytochrome P450 reductase / 1.072
3qft FADNADPH--cytochrome P450 reductase / 1.064
4y9r FADNADPH--cytochrome P450 reductase / 1.020
4yao FADNADPH--cytochrome P450 reductase / 1.009
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.999
3qfr FADNADPH--cytochrome P450 reductase / 0.997
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.990
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.989
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.962
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.942
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.942
1amo FADNADPH--cytochrome P450 reductase / 0.939
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.934
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.924
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.923
3vo2 FADFerredoxin--NADP reductase / 0.923
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.915
2rc6 FADFerredoxin--NADP reductase / 0.908
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.905
1gaw FADFerredoxin / 0.904
1que FADFerredoxin--NADP reductase 1.18.1.2 0.902
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.900
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.900
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.896
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.896
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.895
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.894
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.893
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.890
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.888
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.883
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.878
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.877
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.872
1tll FADNitric oxide synthase, brain 1.14.13.39 0.872
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.870
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.867
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.863
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.861
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.858
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.858
3w5u FADFerredoxin / 0.853
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.852
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.848
3qe2 FADNADPH--cytochrome P450 reductase / 0.848
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.845
2bf4 FADNADPH--cytochrome P450 reductase / 0.843
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.833
1sm4 FADFerredoxin--NADP reductase / 0.830
2rc5 FADFerredoxin--NADP reductase / 0.827
2bpo FADNADPH--cytochrome P450 reductase / 0.820
1gaq FADFerredoxin / 0.818
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.814
3qfc FADNADPH--cytochrome P450 reductase / 0.812
2eix FADNADH-cytochrome b5 reductase / 0.805
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.804
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.800
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.769
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.769
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.767
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.763
4k1x FADNADPH:ferredoxin reductase / 0.752
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.749
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.743
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.737
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.730
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.729
1cqx FADFlavohemoprotein / 0.727
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.726
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.721
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.720
2gpj FADSiderophore-interacting protein / 0.707
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.705
3fpk FADFerredoxin-NADP reductase / 0.697
3crz FADFerredoxin--NADP+ reductase / 0.687
2ptf FMNUncharacterized protein MTH_863 / 0.686
2iml FMNUncharacterized protein / 0.683
3hdy FDAUDP-galactopyranose mutase / 0.682
4b4d FADFerredoxin-NADP reductase / 0.680
2bn4 FADNADPH--cytochrome P450 reductase / 0.678
2qdx FADFerredoxin--NADP+ reductase / 0.678
2bgj FADNADPH:ferredoxin reductase / 0.673
4fk8 FADFerredoxin--NADP reductase / 0.670
2bgi FADNADPH:ferredoxin reductase / 0.667
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.666
1cc2 FADCholesterol oxidase 1.1.3.6 0.663
3mj4 FADUDP-galactopyranose mutase / 0.663
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.663
2vnj FADNADPH:ferredoxin reductase / 0.661
1b8s FADCholesterol oxidase 1.1.3.6 0.659
1pox FADPyruvate oxidase 1.2.3.3 0.659
4rek FADCholesterol oxidase 1.1.3.6 0.659
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.658
3e4v FMNUncharacterized protein / 0.657
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.656
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.656
1gvh FADFlavohemoprotein / 0.655
2nr4 FMNConserved protein / 0.654
1pow FADPyruvate oxidase 1.2.3.3 0.650