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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1j9g FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1j9g FMNFlavodoxin / 1.197
1c7f FMNFlavodoxin / 1.063
1xyy FMNFlavodoxin / 1.044
1akr FMNFlavodoxin / 1.019
1azl FMNFlavodoxin / 1.019
1wsb FMNFlavodoxin / 0.974
1xyv FMNFlavodoxin / 0.972
1akw FMNFlavodoxin / 0.965
3f6r FMNFlavodoxin / 0.951
1j8q FMNFlavodoxin / 0.937
2fx2 FMNFlavodoxin / 0.909
3f6s FMNFlavodoxin / 0.905
1aku FMNFlavodoxin / 0.897
5tgz FMNCannabinoid receptor 1 / 0.884
3f90 FMNFlavodoxin / 0.869
3kap FMNFlavodoxin / 0.856
1ahn FMNFlavodoxin 1 / 0.853
2v5u FMNFlavodoxin / 0.849
3esz FMNFlavodoxin / 0.846
5xr8 FMNCannabinoid receptor 1 / 0.804
3kaq FMNFlavodoxin / 0.800
4oxx FMNCindoxin / 0.782
4fx2 FMNFlavodoxin / 0.779
3esy FMNFlavodoxin / 0.777
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.775
1czn FMNFlavodoxin / 0.773
2v5v FMNFlavodoxin / 0.772
5xra FMNCannabinoid receptor 1 / 0.768
1ofv FMNFlavodoxin / 0.762
1fx1 FMNFlavodoxin / 0.761
2fcr FMNFlavodoxin / 0.725
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.722
5fx2 FMNFlavodoxin / 0.722
1ja0 FMNNADPH--cytochrome P450 reductase / 0.721
4bmo FMNProtein NrdI / 0.721
2bf4 FMNNADPH--cytochrome P450 reductase / 0.716
1amo FMNNADPH--cytochrome P450 reductase / 0.714
4bmp FMNProtein NrdI / 0.712
2ohh FMNType A flavoprotein FprA 1 0.711
4yao FMNNADPH--cytochrome P450 reductase / 0.710
1t5b FMNFMN-dependent NADH-azoreductase / 0.705
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.700
2ohj FMNType A flavoprotein FprA 1 0.697
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.696
2bn4 FMNNADPH--cytochrome P450 reductase / 0.695
1bu5 RBFFlavodoxin / 0.692
3n39 FMNProtein NrdI / 0.685
1ja1 FMNNADPH--cytochrome P450 reductase / 0.684
3n3a FMNProtein NrdI / 0.684
1ych FMNNitric oxide reductase 1 0.683
3n3b FMNProtein NrdI / 0.682
3qfr FMNNADPH--cytochrome P450 reductase / 0.669
3ojw FMNNADPH--cytochrome P450 reductase / 0.665
3ojx FMNNADPH--cytochrome P450 reductase / 0.663
3qe2 FMNNADPH--cytochrome P450 reductase / 0.663
2ohi FMNType A flavoprotein FprA 1 0.662
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.659
2w5u FMNFlavodoxin / 0.655
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.654
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.651