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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1j8q FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1j8q FMNFlavodoxin / 1.230
1wsb FMNFlavodoxin / 1.220
2fx2 FMNFlavodoxin / 1.149
1xyv FMNFlavodoxin / 1.042
1akw FMNFlavodoxin / 1.037
1ahn FMNFlavodoxin 1 / 1.034
1azl FMNFlavodoxin / 1.029
1akr FMNFlavodoxin / 1.028
1c7f FMNFlavodoxin / 0.988
3f6s FMNFlavodoxin / 0.976
1czn FMNFlavodoxin / 0.964
3esz FMNFlavodoxin / 0.950
1j9g FMNFlavodoxin / 0.937
1ofv FMNFlavodoxin / 0.936
1xyy FMNFlavodoxin / 0.919
1fx1 FMNFlavodoxin / 0.900
5tgz FMNCannabinoid receptor 1 / 0.898
4fx2 FMNFlavodoxin / 0.897
1aku FMNFlavodoxin / 0.891
2v5u FMNFlavodoxin / 0.887
1yob FMNFlavodoxin 2 / 0.868
3f90 FMNFlavodoxin / 0.866
3f6r FMNFlavodoxin / 0.864
3kap FMNFlavodoxin / 0.856
3esy FMNFlavodoxin / 0.852
2fcr FMNFlavodoxin / 0.816
2v5v FMNFlavodoxin / 0.806
4oxx FMNCindoxin / 0.802
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.786
5xr8 FMNCannabinoid receptor 1 / 0.783
2bf4 FMNNADPH--cytochrome P450 reductase / 0.777
1amo FMNNADPH--cytochrome P450 reductase / 0.775
4yao FMNNADPH--cytochrome P450 reductase / 0.775
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.763
5fx2 FMNFlavodoxin / 0.760
2bn4 FMNNADPH--cytochrome P450 reductase / 0.754
3qe2 FMNNADPH--cytochrome P450 reductase / 0.754
5xra FMNCannabinoid receptor 1 / 0.754
3n39 FMNProtein NrdI / 0.751
1fue FMNFlavodoxin / 0.750
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.750
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.748
2mok FMNFlavodoxin 1 / 0.746
3ojw FMNNADPH--cytochrome P450 reductase / 0.742
3qfr FMNNADPH--cytochrome P450 reductase / 0.737
4y7c FMNNADPH--cytochrome P450 reductase / 0.735
2ohi FMNType A flavoprotein FprA 1 0.733
3ojx FMNNADPH--cytochrome P450 reductase / 0.723
1ja0 FMNNADPH--cytochrome P450 reductase / 0.721
2w5u FMNFlavodoxin / 0.716
4bmp FMNProtein NrdI / 0.714
4bmo FMNProtein NrdI / 0.710
2ohj FMNType A flavoprotein FprA 1 0.709
3n3b FMNProtein NrdI / 0.706
2ohh FMNType A flavoprotein FprA 1 0.705
1ycg FMNNitric oxide reductase 1 0.704
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.701
3kaq FMNFlavodoxin / 0.698
1ych FMNNitric oxide reductase 1 0.695
2q9u FMNA-type flavoprotein / 0.693
3n3a FMNProtein NrdI / 0.688
3mkh FADNitroalkane oxidase / 0.687
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.677
1ja1 FMNNADPH--cytochrome P450 reductase / 0.676
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.673
4nm9 FADBifunctional protein PutA / 0.673
3d72 FADVivid PAS protein VVD / 0.670
1vhn FMNtRNA-dihydrouridine synthase / 0.668
3vkj FNRIsopentenyl-diphosphate delta-isomerase / 0.668
3e2s FADBifunctional protein PutA 1.5.5.2 0.664
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.662
1bu5 RBFFlavodoxin / 0.658
2fzm FADBifunctional protein PutA 1.5.5.2 0.657
1j9z FMNNADPH--cytochrome P450 reductase / 0.656
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.654
2eba FADPutative glutaryl-CoA dehydrogenase / 0.654
1ykg FMNSulfite reductase [NADPH] flavoprotein alpha-component / 0.653
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.652
4j8p FMNFlavodoxin / 0.652
2g37 FADProline dehydrogenase / 0.650
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.650