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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1j3k WRA Bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1j3k WRABifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 1.059
1j3i WRABifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.813
3rg9 WRABifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.760
3inv C50Bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.732
1dg7 WRBDihydrofolate reductase 1.5.1.3 0.676
3qlz QLZUncharacterized protein / 0.666
4dp3 MMVBifunctional dihydrofolate reductase-thymidylate synthase / 0.665
1hfr MOTDihydrofolate reductase 1.5.1.3 0.662
1hfp MOTDihydrofolate reductase 1.5.1.3 0.654