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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1iyz NDP Probable quinone oxidoreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1iyz NDPProbable quinone oxidoreductase / 1.170
3qwb NDPProbable quinone oxidoreductase 1.6.5.5 0.720
1qor NDPQuinone oxidoreductase 1 / 0.707
3jyn NDPQuinone oxidoreductase / 0.703
2c0c NAPProstaglandin reductase 3 1 0.685
1guf NDPEnoyl-[acyl-carrier-protein] reductase 1, mitochondrial 1.3.1.10 0.670
5dp2 NAPCurF / 0.669
1piw NAPNADP-dependent alcohol dehydrogenase 6 1.1.1.2 0.666
2j3i NAPNADPH-dependent oxidoreductase 2-alkenal reductase 1.3.1.74 0.664
2y05 NAPProstaglandin reductase 1 / 0.663
3qt6 2P0Mevalonate diphosphate decarboxylase / 0.657
1lwx AZDNucleoside diphosphate kinase, cytosolic 2.7.4.6 0.656
2hk9 ATRShikimate dehydrogenase (NADP(+)) / 0.655
4j49 NADUncharacterized protein / 0.655
3ntd COAFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.651