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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ixe COA Citrate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ixe COACitrate synthase / 1.253
2r9e SDXCitrate synthase 2.3.3.16 1.075
2r26 CMCCitrate synthase 2.3.3.16 1.043
2h12 CMXCitrate synthase / 0.807
1a59 COA2-methylcitrate synthase / 0.786
1aj8 COACitrate synthase / 0.757
1csc CMCCitrate synthase, mitochondrial 2.3.3.1 0.753
5cts CMCCitrate synthase, mitochondrial 2.3.3.1 0.746
6cts CICCitrate synthase, mitochondrial 2.3.3.1 0.707
3csc ACOCitrate synthase, mitochondrial 2.3.3.1 0.700
3dkv AP5Adenylate kinase / 0.657
1q6y COAFormyl-CoA:oxalate CoA-transferase / 0.653
4gvz ADPArginine kinase 2.7.3.3 0.653