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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ivr CBA Aspartate aminotransferase, mitochondrial 2.6.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ivr CBAAspartate aminotransferase, mitochondrial 2.6.1.1 1.289
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 1.076
1map KETAspartate aminotransferase, mitochondrial 2.6.1.1 1.037
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 0.938
1arg PPDAspartate aminotransferase 2.6.1.1 0.890
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 0.888
1arh PPDAspartate aminotransferase 2.6.1.1 0.856
4dbc 3QPAspartate aminotransferase 2.6.1.1 0.852
1aka PLPAspartate aminotransferase, mitochondrial 2.6.1.1 0.841
1cq8 PY6Aspartate aminotransferase 2.6.1.1 0.834
1ahg TYR_PLPAspartate aminotransferase 2.6.1.1 0.833
1cq7 PY5Aspartate aminotransferase 2.6.1.1 0.827
1oxo IK2Aspartate aminotransferase, mitochondrial 2.6.1.1 0.816
1cl2 PPGCystathionine beta-lyase MetC 4.4.1.8 0.771
3ele PLPAminotransferase / 0.725
3qpg 3QPAspartate aminotransferase 2.6.1.1 0.723
4itx IN5Cystathionine beta-lyase MetC 4.4.1.8 0.702
1x28 PGUAspartate aminotransferase 2.6.1.1 0.700
2gqn BLPCystathionine beta-lyase MetC 4.4.1.8 0.681
3ei8 PL5LL-diaminopimelate aminotransferase, chloroplastic / 0.681
1toi HCIAspartate aminotransferase 2.6.1.1 0.677
1toj HCIAspartate aminotransferase 2.6.1.1 0.674
1cq6 PY4Aspartate aminotransferase 2.6.1.1 0.670
2fq6 P3FCystathionine beta-lyase MetC 4.4.1.8 0.667
2cht TSAChorismate mutase AroH 5.4.99.5 0.658
4cs0 ACOPanD regulatory factor / 0.658
2ycn P61Tyrosine phenol-lyase 4.1.99.2 0.657
2ykv IK2Beta-transaminase / 0.651
4aoa IK2Beta-phenylalanine transaminase 2.6.1 0.650