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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ikg REX D-alanyl-D-alanine carboxypeptidase 3.4.16.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ikg REXD-alanyl-D-alanine carboxypeptidase 3.4.16.4 1.154
1pw1 HELD-alanyl-D-alanine carboxypeptidase 3.4.16.4 0.825
1iki REYD-alanyl-D-alanine carboxypeptidase 3.4.16.4 0.671
1opm IYGPeptidyl-glycine alpha-amidating monooxygenase 1.14.17.3 0.666
5c7t APRADP-ribose pyrophosphatase / 0.657
1oc1 ASVIsopenicillin N synthase 1.21.3.1 0.653
2vbd V10Isopenicillin N synthase 1.21.3.1 0.652