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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ijj LAR Actin, alpha skeletal muscle

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ijj LARActin, alpha skeletal muscle / 1.058
4h03 LARActin, alpha skeletal muscle / 0.798
4h0y LARActin, alpha skeletal muscle / 0.796
2q0u LABActin, alpha skeletal muscle / 0.787
2v51 LABActin, alpha skeletal muscle / 0.707
4gy2 LARActin, alpha skeletal muscle / 0.698
3sjh LARActin, alpha skeletal muscle / 0.697
1rdw LARActin, alpha skeletal muscle / 0.682
2v52 LABActin, alpha skeletal muscle / 0.663
4h0t LARActin, alpha skeletal muscle / 0.657
1rfq LARActin, alpha skeletal muscle / 0.651