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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ij8 BNI Avidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ij8 BNIAvidin / 0.937
2fhl BNIAvidin-related protein 4/5 / 0.790
2y3f BTNStreptavidin / 0.752
2izf BTNStreptavidin / 0.751
2izh BTNStreptavidin / 0.751
4bcs BTNAvidin-related protein 4/5 / 0.747
4bj8 BTNAvidin / 0.747
3vhh VHHAvidin / 0.745
4z28 BTNHoefavidin / 0.745
2avi BTNAvidin / 0.743
3ew2 BTNHypothetical conserved protein / 0.735
2uz2 BTNAvd protein / 0.729
2uyw BTNAvd protein / 0.727
1lcw SHMStreptavidin / 0.722
3wzn BTNStreptavidin / 0.722
1n9m BTNStreptavidin / 0.720
1y52 BTNAvidin-related protein 4/5 / 0.718
1stp BTNStreptavidin / 0.717
4dne DTBStreptavidin / 0.715
1luq BTNStreptavidin / 0.714
1swn BTNStreptavidin / 0.711
1i9h BNIStreptavidin / 0.709
4yvb BTNStreptavidin / 0.707
3rdo BTNStreptavidin / 0.704
1n43 BTNStreptavidin / 0.693
1swp BTQStreptavidin / 0.693
2rtm IMIStreptavidin / 0.687
1swr BTNStreptavidin / 0.683
2rtg BTNStreptavidin / 0.677
3t2w BTNAvidin/streptavidin / 0.675
2izj BTNStreptavidin / 0.671
2izl IMIStreptavidin / 0.662
1ndj BTNStreptavidin / 0.661
1swt BTNStreptavidin / 0.656
3wyp BSOStreptavidin / 0.656
1swp BTNStreptavidin / 0.653
2rtr IMIStreptavidin / 0.653