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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1i9n IOA Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.904
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.805
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.801
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.768
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.768
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.765
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.762
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.758
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.750
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.749
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.749
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.743
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.742
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.741
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.740
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.731
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.726
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.726
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.722
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.720
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.718
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.717
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.715
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.714
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.713
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.711
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.711
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.706
3mho J43Carbonic anhydrase 2 4.2.1.1 0.703
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.702
4xiw AZMCarbonic anhydrase, alpha type / 0.701
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.700
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.699
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.698
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.697
3da2 4MDCarbonic anhydrase 13 4.2.1.1 0.696
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.695
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.694
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.694
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.693
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.687
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.687
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.687
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.685
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.684
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.683
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.681
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.679
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.678
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.677
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.674
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.674
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.669
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.669
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.668
3lxe TORCarbonic anhydrase 1 4.2.1.1 0.668
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.668
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.667
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.664
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.657
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.656
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.655
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.655
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.652
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.652
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.651