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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1i7p FAD NADH-cytochrome b5 reductase 3 1.6.2.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.399
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.136
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.109
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.075
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.885
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.883
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.872
1amo FADNADPH--cytochrome P450 reductase / 0.870
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.866
3qfc FADNADPH--cytochrome P450 reductase / 0.853
2eix FADNADH-cytochrome b5 reductase / 0.851
1gaw FADFerredoxin / 0.850
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.845
3ojw FADNADPH--cytochrome P450 reductase / 0.842
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.838
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.838
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.838
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.832
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.832
3qfs FADNADPH--cytochrome P450 reductase / 0.828
3qe2 FADNADPH--cytochrome P450 reductase / 0.823
3vo2 FADFerredoxin--NADP reductase / 0.821
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.817
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.815
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.814
3ojx FADNADPH--cytochrome P450 reductase / 0.812
3fpk FADFerredoxin-NADP reductase / 0.811
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.811
1que FADFerredoxin--NADP reductase 1.18.1.2 0.810
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.805
3qft FADNADPH--cytochrome P450 reductase / 0.803
4y7c FADNADPH--cytochrome P450 reductase / 0.803
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.801
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.799
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.798
4yao FADNADPH--cytochrome P450 reductase / 0.796
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.794
1ja1 FADNADPH--cytochrome P450 reductase / 0.794
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.794
3qfr FADNADPH--cytochrome P450 reductase / 0.785
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.780
2bf4 FADNADPH--cytochrome P450 reductase / 0.780
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.779
1j9z FADNADPH--cytochrome P450 reductase / 0.779
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.774
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.770
1ja0 FADNADPH--cytochrome P450 reductase / 0.769
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.766
1gvh FADFlavohemoprotein / 0.765
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.762
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.761
2rc5 FADFerredoxin--NADP reductase / 0.761
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.761
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.757
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.755
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.751
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.748
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.747
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.747
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.747
1cqx FADFlavohemoprotein / 0.746
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.745
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.745
1tll FADNitric oxide synthase, brain 1.14.13.39 0.744
4y9u FADNADPH--cytochrome P450 reductase / 0.744
3w5u FADFerredoxin / 0.740
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.739
3in6 FMNUncharacterized protein / 0.734
4yaf FADNADPH--cytochrome P450 reductase / 0.733
1sm4 FADFerredoxin--NADP reductase / 0.731
4y9r FADNADPH--cytochrome P450 reductase / 0.731
2pia FMNPhthalate dioxygenase reductase / 0.727
2gpj FADSiderophore-interacting protein / 0.718
2bn4 FADNADPH--cytochrome P450 reductase / 0.709
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.705
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.704
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.702
4yau FADNADPH--cytochrome P450 reductase / 0.702
1a8p FADFerredoxin--NADP reductase / 0.697
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.691
4ybn FADFlavin-nucleotide-binding protein / 0.690
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.687
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.686
4f07 FADStyrene monooxygenase component 2 / 0.686
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.684
2bpo FADNADPH--cytochrome P450 reductase / 0.684
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.682
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.681
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.678
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.677
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.676
3e4v FMNUncharacterized protein / 0.675
3nix FADFlavoprotein/dehydrogenase / 0.674
1eje FMNProtein MTH_152 / 0.673
1gaq FADFerredoxin / 0.673
2rc6 FADFerredoxin--NADP reductase / 0.673
2qa1 FADPgaE / 0.669
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.667
3cgb FADCoenzyme A disulfide reductase / 0.665
5cho FADFlavin reductase / 0.665
2ptf FMNUncharacterized protein MTH_863 / 0.661
2iml FMNUncharacterized protein / 0.660
4h4u FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.660
2qdx FADFerredoxin--NADP+ reductase / 0.658
4h6r FDAProline dehydrogenase / 0.658
2v1a FMNNPH1-1 / 0.657
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.657
3crz FADFerredoxin--NADP+ reductase / 0.655
3ust FADAcMNPV orf92 / 0.655
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.653
2e83 FMNFMN-binding protein / 0.652
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.652
3lb8 FADPutidaredoxin reductase 1.18.1.5 0.652
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.651
1gxf FADTrypanothione reductase 1.8.1.12 0.650