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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1hwz NDP Glutamate dehydrogenase 1, mitochondrial 1.4.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1hwz NDPGlutamate dehydrogenase 1, mitochondrial 1.4.1.3 1.246
3etg NDPGlutamate dehydrogenase 1, mitochondrial 1.4.1.3 0.725
3mvq NDPGlutamate dehydrogenase 1, mitochondrial 1.4.1.3 0.692
4xgi NADGlutamate dehydrogenase / 0.691
2hk9 NAPShikimate dehydrogenase (NADP(+)) / 0.660
5a05 NDPGlucose-fructose oxidoreductase / 0.655
2q0l NAPThioredoxin reductase 1.8.1.9 0.650