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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1hpo UNI Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1hpo UNIGag-Pol polyprotein 3.4.23.16 1.052
4nju TPVProtease / 0.708
7upj INUGag-Pol polyprotein 3.4.23.16 0.705
2o4p TPVProtease / 0.690
5upj UINGag-Pol polyprotein / 0.686
4upj U04Gag-Pol polyprotein / 0.685
2upj U02Gag-Pol polyprotein 3.4.23.16 0.680
2i4w KGQProtease / 0.668
6upj NIUGag-Pol polyprotein / 0.658