Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1hb1 OCV Isopenicillin N synthase 1.21.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1hb1 OCVIsopenicillin N synthase 1.21.3.1 1.116
1bk0 ACVIsopenicillin N synthase 1.21.3.1 1.046
1hb3 SCVIsopenicillin N synthase 1.21.3.1 1.024
1obn ASVIsopenicillin N synthase 1.21.3.1 1.023
2ivi ACWIsopenicillin N synthase 1.21.3.1 1.013
3zoi M2WIsopenicillin N synthase 1.21.3.1 0.990
1qiq ACCIsopenicillin N synthase 1.21.3.1 0.932
1blz ACVIsopenicillin N synthase 1.21.3.1 0.923
1uzw CDHIsopenicillin N synthase 1.21.3.1 0.917
1w06 W05Isopenicillin N synthase 1.21.3.1 0.904
1oc1 ASVIsopenicillin N synthase 1.21.3.1 0.897
2y60 M8FIsopenicillin N synthase 1.21.3.1 0.885
2wo7 ASVIsopenicillin N synthase 1.21.3.1 0.862
2y6f M9FIsopenicillin N synthase 1.21.3.1 0.858
2jb4 A14Isopenicillin N synthase 1.21.3.1 0.855
2bu9 HFVIsopenicillin N synthase 1.21.3.1 0.848
2vbp VB1Isopenicillin N synthase 1.21.3.1 0.845
2vbd V10Isopenicillin N synthase 1.21.3.1 0.844
1odn APVIsopenicillin N synthase 1.21.3.1 0.835
2vcm M11Isopenicillin N synthase 1.21.3.1 0.828
1qjf ACSIsopenicillin N synthase 1.21.3.1 0.804
2bjs ACVIsopenicillin N synthase 1.21.3.1 0.783
4bb3 KKAIsopenicillin N synthase 1.21.3.1 0.696
4xg1 LLPDiaminopimelate decarboxylase / 0.681
3zky WT4Isopenicillin N synthase 1.21.3.1 0.664
3cd2 MTXDihydrofolate reductase 1.5.1.3 0.663
4bqs K2QShikimate kinase 2.7.1.71 0.654
3rt8 CWDGlutamate receptor 3 / 0.650