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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1h42 FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.366
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.323
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.306
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.282
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.267
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.264
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.263
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.242
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.234
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.225
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.218
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.216
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.208
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.207
1que FADFerredoxin--NADP reductase 1.18.1.2 1.207
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.195
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.190
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.185
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.185
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.181
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.175
3vo2 FADFerredoxin--NADP reductase / 1.163
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.159
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.159
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.156
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.151
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.136
1gaw FADFerredoxin / 1.112
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.104
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.103
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.093
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.093
2rc6 FADFerredoxin--NADP reductase / 1.091
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.082
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.075
3w5u FADFerredoxin / 1.062
1sm4 FADFerredoxin--NADP reductase / 1.012
2rc5 FADFerredoxin--NADP reductase / 1.007
1ewy FADFerredoxin--NADP reductase 1.18.1.2 1.005
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.003
1gaq FADFerredoxin / 0.976
4yaf FADNADPH--cytochrome P450 reductase / 0.974
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.954
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.954
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.950
3qfs FADNADPH--cytochrome P450 reductase / 0.948
3ojw FADNADPH--cytochrome P450 reductase / 0.938
4yau FADNADPH--cytochrome P450 reductase / 0.937
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.935
1tll FADNitric oxide synthase, brain 1.14.13.39 0.922
3qfr FADNADPH--cytochrome P450 reductase / 0.921
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.897
1ja0 FADNADPH--cytochrome P450 reductase / 0.896
1ja1 FADNADPH--cytochrome P450 reductase / 0.894
4y9u FADNADPH--cytochrome P450 reductase / 0.892
3qfc FADNADPH--cytochrome P450 reductase / 0.890
3qe2 FADNADPH--cytochrome P450 reductase / 0.888
4y7c FADNADPH--cytochrome P450 reductase / 0.881
1j9z FADNADPH--cytochrome P450 reductase / 0.859
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.855
4y9r FADNADPH--cytochrome P450 reductase / 0.855
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.847
1amo FADNADPH--cytochrome P450 reductase / 0.830
3ojx FADNADPH--cytochrome P450 reductase / 0.824
1cqx FADFlavohemoprotein / 0.823
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.819
4yao FADNADPH--cytochrome P450 reductase / 0.816
2eix FADNADH-cytochrome b5 reductase / 0.812
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.805
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.805
3fpk FADFerredoxin-NADP reductase / 0.804
3qft FADNADPH--cytochrome P450 reductase / 0.799
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.779
2bf4 FADNADPH--cytochrome P450 reductase / 0.772
2bpo FADNADPH--cytochrome P450 reductase / 0.769
2gpj FADSiderophore-interacting protein / 0.768
1gvh FADFlavohemoprotein / 0.763
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.759
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.758
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.751
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.739
2ptf FMNUncharacterized protein MTH_863 / 0.730
2bn4 FADNADPH--cytochrome P450 reductase / 0.726
2iml FMNUncharacterized protein / 0.717
3in6 FMNUncharacterized protein / 0.717
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.715
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.710
2vnk FADNADPH:ferredoxin reductase / 0.708
1a8p FADFerredoxin--NADP reductase / 0.707
2vnh FADNADPH:ferredoxin reductase / 0.701
3hjk FADVivid PAS protein VVD / 0.701
2bgj FADNADPH:ferredoxin reductase / 0.695
2vnj FADNADPH:ferredoxin reductase / 0.694
2hq9 FADMll6688 protein / 0.693
2bgi FADNADPH:ferredoxin reductase / 0.691
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.689
3pl8 FADPyranose 2-oxidase / 0.686
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.684
4ees FMNPhototropin-2 2.7.11.1 0.682
3e4v FMNUncharacterized protein / 0.678
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.678
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.677
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.671
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.669
1eje FMNProtein MTH_152 / 0.668
2dvl FADAcyl-CoA dehydrogenase / 0.667
3k4c FADPyranose 2-oxidase / 0.667
3kyb FADUDP-galactopyranose mutase 5.4.99.9 0.665
4k1x FADNADPH:ferredoxin reductase / 0.665
4b4d FADFerredoxin-NADP reductase / 0.662
4nm9 FADBifunctional protein PutA / 0.662
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.660
2c3d FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.659
1pow FADPyruvate oxidase 1.2.3.3 0.658
1wlk FMNFMN-binding protein / 0.658
3a20 FMNFMN-binding protein / 0.658
4x9m FADUncharacterized protein MG039 homolog / 0.658
3fg2 FADPutative rubredoxin reductase / 0.657
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.656
3mkh FADNitroalkane oxidase / 0.655
4f07 FADStyrene monooxygenase component 2 / 0.655
4x9n FADUncharacterized protein MG039 homolog / 0.654
4ybn FADFlavin-nucleotide-binding protein / 0.654
3dme FADPutative conserved exported protein / 0.653
4fk8 FADFerredoxin--NADP reductase / 0.653
3crz FADFerredoxin--NADP+ reductase / 0.652
2e83 FMNFMN-binding protein / 0.651
2qdx FADFerredoxin--NADP+ reductase / 0.651