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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gzf NAD Mono-ADP-ribosyltransferase C3 2.4.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1gzf NADMono-ADP-ribosyltransferase C3 2.4.2 1.230
4h03 NADIota toxin component Ia / 0.764
4h0v NADIota toxin component Ia / 0.750
4xzj NADPutative NAD(+)--arginine ADP-ribosyltransferase Vis 2.4.2.31 0.722
4h0y NADIota toxin component Ia / 0.717
1axg NADAlcohol dehydrogenase E chain 1.1.1.1 0.666
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.657
3buz TADIota toxin component Ia / 0.656
2rc5 FADFerredoxin--NADP reductase / 0.655
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.654
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.653
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.651