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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gr1 FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.330
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.308
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.298
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.297
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.294
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.282
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.274
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.261
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.256
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.253
1que FADFerredoxin--NADP reductase 1.18.1.2 1.253
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.250
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.249
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.238
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.225
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.216
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.207
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.207
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.197
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.192
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.191
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.190
3vo2 FADFerredoxin--NADP reductase / 1.189
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.179
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.169
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.167
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.160
1gaw FADFerredoxin / 1.158
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.143
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.143
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.134
3w5u FADFerredoxin / 1.128
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.120
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.113
2rc6 FADFerredoxin--NADP reductase / 1.091
1gaq FADFerredoxin / 1.089
2rc5 FADFerredoxin--NADP reductase / 1.067
3qfs FADNADPH--cytochrome P450 reductase / 1.060
1sm4 FADFerredoxin--NADP reductase / 1.058
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.049
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.043
4yaf FADNADPH--cytochrome P450 reductase / 1.020
1f20 FADNitric oxide synthase, brain 1.14.13.39 1.015
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.997
3ojw FADNADPH--cytochrome P450 reductase / 0.990
3qft FADNADPH--cytochrome P450 reductase / 0.987
3qfc FADNADPH--cytochrome P450 reductase / 0.983
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.982
1ja1 FADNADPH--cytochrome P450 reductase / 0.969
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.962
1tll FADNitric oxide synthase, brain 1.14.13.39 0.959
4y7c FADNADPH--cytochrome P450 reductase / 0.959
3qe2 FADNADPH--cytochrome P450 reductase / 0.953
4y9u FADNADPH--cytochrome P450 reductase / 0.948
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.947
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.940
4yau FADNADPH--cytochrome P450 reductase / 0.930
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.913
4y9r FADNADPH--cytochrome P450 reductase / 0.910
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.898
3qfr FADNADPH--cytochrome P450 reductase / 0.892
1cqx FADFlavohemoprotein / 0.880
1ja0 FADNADPH--cytochrome P450 reductase / 0.878
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.860
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.860
1j9z FADNADPH--cytochrome P450 reductase / 0.853
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.851
3ojx FADNADPH--cytochrome P450 reductase / 0.828
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.823
1gvh FADFlavohemoprotein / 0.819
2eix FADNADH-cytochrome b5 reductase / 0.808
1amo FADNADPH--cytochrome P450 reductase / 0.806
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.790
2bn4 FADNADPH--cytochrome P450 reductase / 0.790
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.790
4yao FADNADPH--cytochrome P450 reductase / 0.784
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.771
4fk8 FADFerredoxin--NADP reductase / 0.771
2pia FMNPhthalate dioxygenase reductase / 0.766
2gpj FADSiderophore-interacting protein / 0.757
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.754
2bf4 FADNADPH--cytochrome P450 reductase / 0.751
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.745
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.725
3fpk FADFerredoxin-NADP reductase / 0.725
4k1x FADNADPH:ferredoxin reductase / 0.715
2qdx FADFerredoxin--NADP+ reductase / 0.708
3e4v FMNUncharacterized protein / 0.704
2vnj FADNADPH:ferredoxin reductase / 0.700
3in6 FMNUncharacterized protein / 0.696
2hq9 FADMll6688 protein / 0.693
3q9t FAYUncharacterized protein / 0.693
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.692
2bgi FADNADPH:ferredoxin reductase / 0.690
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.687
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.681
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 0.681
2ptf FMNUncharacterized protein MTH_863 / 0.678
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.677
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.670
2vnh FADNADPH:ferredoxin reductase / 0.670
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.669
3r5z F42Uncharacterized protein / 0.668
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.663
4l82 FMNUncharacterized protein / 0.663
3pft FMNFlavin reductase / 0.660
3lsh FADPyranose 2-oxidase / 0.659
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 0.659
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 0.659
1wlk FMNFMN-binding protein / 0.657
2bgj FADNADPH:ferredoxin reductase / 0.657
3k4c FADPyranose 2-oxidase / 0.657
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 0.657
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.657
4rhe FMNFlavin prenyltransferase UbiX / 0.655
3a20 FMNFMN-binding protein / 0.654
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.653
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.652
3a6q FMNFMN-binding protein / 0.652
4eet FMNPhototropin-2 2.7.11.1 0.652
2vnk FADNADPH:ferredoxin reductase / 0.650